Tromsø

Genomic Support Centre in Tromsø (GSCT)

GSCT

GSCT offers complete and comprehensive support for sequencing from experimental design, bioinformatic analysis, publication, and deposition of sequencing results.

front page website rbtromso flowchart
Desserts 01 1024x683

Infrastructure

Long read: Nanopore GridION mk1
Single cell: Chromium iX 10X Genomics
Short read: Illumina NextSeq 550, Illumina MiSeq
Quality control: Nanodrop ND-1000, Qubit, Agilent 2100 Bioanalyzer
PCR: Biorad C1000 Touch CFX384, CFX96 Real-Time System
Liquid handling: Tecan Fluent 480

Services

Experimental design guidance according to available technology. Diverse DNA/RNA extraction protocols from biological sources. Library preparation for sequencing. Quality and quantity assessment of RNA/DNA. Short read sequencing. Long read sequencing. Quality assessment of sequencing results.  Cooperative bioinformatic analyses. Database sequence deposition. Help with publication.

BIOINFORMATIC Services
-NGS sequence analysis from FASTQ to BAM , VCF and beyond
-Extended annotation with Bioconductors numerous annotation packages
-Functional analyses with GSEA and other enrichment algorithms.
-Create custom high quality figures for publication with R’s extensive graphing library
-Help with the visualization and interpretation of complex data
-Help with file formats, headers, and statistics
-Help with finding relevant and available resources and applications

Local Users
Stuck with a biological dataset?
Time running out?
Unsure of what to do and NO ONE is answering your emails?
Contact: christopher.fenton@uit.no

Rivers 01 1024x683
Snow Mountains 01 1024x683

News

The Genomic Support Centre in Tromsø has recently agreed to cooperate with the medical genetics department at the University Hospital of Northern Norway (UNN) for the purposes of research and diagnostics.

Staff

Our passionate and dedicated team brings together a diverse range of skills and expertise to deliver exceptional results. From creative visionaries to meticulous strategists, we work seamlessly together to meet and exceed our clients’ expectations.

chris

Chris Graham Fenton

Node Leader

Contact Us

Here’s how you can contact us

Address

Room L9.105B., MH-building, University of Tromsø

Phone

+47 481 96479

Scroll to Top